SNP Profiles of CC 10 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
1._CC_10	GG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
2._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
3._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
4._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
5._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
6._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
7._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
8._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
9._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
10._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
11._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
12._CC_10_Fld#_47_Plt#_5	CG	AG	AA	AA	AA	_	_	AA	AA	AG	AG	AG	AA	GG
13._CC_10_Fld#_47A_Plt#_4	CG	AG	AA	AA	AA	_	_	AA	AA	AG	AG	AG	AA	GG
14._CC_10_Fld#_47B_Plt#_2	CC	GG	AG	AA	AA	_	_	AA	AG	AG	GG	AG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	GG	GT	AG	CT	CC	TT	CT	CC	AG	GG	CT	AG
1._CC_10	TT	CC	GG	GT	AG	CT	CC	TT	CT	CC	AG	GG	CT	AG
2._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
3._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
4._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
5._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
6._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
7._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
8._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
9._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
10._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	_	AG
11._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	_	AG
12._CC_10_Fld#_47_Plt#_5	AA	GG	CG	AC	_	AG	CC	AC	_	CC	_	GG	AG	AG
13._CC_10_Fld#_47A_Plt#_4	AA	GG	CG	AC	_	AG	CC	AC	_	CC	_	GG	AG	AG
14._CC_10_Fld#_47B_Plt#_2	AG	GG	CC	CC	_	AA	CC	AC	_	AC	_	GG	AG	AA

	29	30	31	32	33
_Input profile	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._CC_10_Fld#_47_Plt#_5	AC	AC	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CC_10_Fld#_47A_Plt#_4	AC	AC	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._CC_10_Fld#_47B_Plt#_2	AA	AC	CC	AT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CC_10

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._CC_10

identical
33 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Trial 1/Rep 1 45

Dapeng Zhang, 2016

2._CC_10

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 9

Dapeng Zhang, 2016

3._CC_10

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 7

Dapeng Zhang, 2016

4._CC_10

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 5

Dapeng Zhang, 2016

5._CC_10

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CC_10 GC-08-271-8-43

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._CC_10 GC-08-271-8-43

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._CC_10 GC-08-271-8-43

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: Dead

9._CC_10 GC-08-271-8-43

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: Dead

10._CC_10

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 2

Dapeng Zhang, 2016

11._CC_10 GC-08-271-8-43

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._CC_10 CC_10_Fld#_47_Plt#_5

50 %
28 shared markers

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USDA-TARS, United States of America

Location: Field: 47, Tree: 5

Notes: TARS_Cacao_collection

13._CC_10 CC_10_Fld#_47A_Plt#_4

50 %
28 shared markers

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USDA-TARS, United States of America

Location: Field: 47A, Tree: 4

14._CC_10 CC_10_Fld#_47B_Plt#_2

37.5 %
28 shared markers

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USDA-TARS, United States of America

Location: Field: 47B, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1442	3	TcSNP1414	4	TcSNP1350	5	TcSNP1253
6	TcSNP1165	7	TcSNP1144	8	TcSNP1075	9	TcSNP1062	10	TcSNP1060
11	TcSNP998	12	TcSNP994	13	TcSNP953	14	TcSNP929	15	TcSNP917
16	TcSNP891	17	TcSNP872	18	TcSNP723	19	TcSNP645	20	TcSNP619
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP242	28	TcSNP230	29	TcSNP193	30	TcSNP150
31	TcSNP144	32	TcSNP32	33	TcSNP25